Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015917721.1_cds_XP_016467253.1_60015
CDS Infomation

[gene=LOC107789889] [db_xref=GeneID:107789889] [protein=transcription factor bHLH140-like isoform X3] [protein_id=XP_016467253.1] [location=complement(join(155579..155800,155876..155908,157133..157303,157387..158008,158683..159593,160469..160587,160696..160735))] [gbkey=CDS]
Sequence

ATGGAAGCAATGGAGATTGATCCTGAAACTAATTCAAAAGGGAAGGATGAAGCGAAACCC
ATAATGGTAATATTGATGGGTGCTCCAGGAAGTGGTAAGTCTACATTTTGTGACCTTGTA
ATGCGAGTCTCTACCCGCCCTTGGGTTCGTATTTGCCAGGATACCATTGGGAATGGTAAG
GCTGGGACAAAGAACCAATGCTTGACAGGTGCAGCTAGTGCGCTAAAGGAAGGAAAAAGT
GTATTTATAGATAGATGCAACTTGGATAGAGAACAGCGGGCCGATTTTTTGAAGCTTGTT
GGTCCAGAAGTTGAGAAGCATGCTGTTGTGCTTGATCTTCCAGCTAAGGTTTGTATTTCT
CGGTCGGTTAAGAGGACGGGGCATGAAGGAAATTTGCAAGGTGGGAAGGCTGCTGCAGTT
GTGAATAGGATGCTACAAAAGAAAGAGTTGCCTAAGCTGAATGAAGGCTATACTCGAATT
ACGGTTTGCCAAGATGAAAAAGATGTTCAAGCTGCAATCAATACTTACACTGCACTTGGT
CCGTCAGATAAACTTCCACCAGGCTTTTTCGGCCAGAAGAACTCAGATGCCAAAGTCCAA
CTTGGTATAATGAAGTTCCTAAAAAAGAAAGATCCTCCTGGATGTTCTGATACTGTGACG
AATGTCTCTCCAGAGAATATTCAATCTCATGCCACCAAGGAAAAGGACTCCAACCAAGTA
CTAGAGAGCCGTGAAGAACCTAAAATGGCATCTGCTGGCAGTAACATTTCTTTAGAAAAT
ACCCCCACACTTGCATTTCCATCTATTTCTACAGCAGATTTCCATTTCAATCTTGATAAA
GCATCGGATATAATAGTTGAAAAGGTTGAAGAATATGTAAATAAGCTTGGAAATGCTAGG
CTTGTCTTGGTGGATTTGTCTCAGAATTCAAAAATACTGTCCCTTGTCAAGGCTAAAGCT
GCAGAGAAGAACATCGACACCAAAAAGTTTTTTACATTTGCGGGGAATATAACTAAACTA
TACTCGGAAGGAGGTTTGCACTGCACCGTGATTGCTAATGCCACTAACTGGCGACTAAAA
CCAGGAGGTGGAGGTGTAAATGCTGCTATATTTAGTGCAGCTGGTCCTGCCCTTGAAACT
GCAACCAAAGTTAGAGCTGGATCCCTTAATCCTGGAAAAGCTATTGTCGTCCCTCTTCCT
TCATCTTCTCCCTTGTTTAGTAGGGAAGGGGTTACTCATGTCATTCATGTCCTTGGACCA
AATATGAATTCCCAGAGACCAAACCATCTCAACAATGACTACGTCAAGGGCTGTCAAATA
CTCCGGGAAGCTTACTCATCACTTTTTGATGGTTTTGCTTTTATAGTTAGGACTCAAGGA
AAACCGGTTAAGGATAATTTTGAAAAAGAACTGAAAAGAGAAGCTCAAGCAGAGCAAGGT
TCTACAAATGGTGAGAAAGCCAAGCGGGAAGCTGTCTGTGAAGTTGACATGAACAAGAAG
TACAAAAGCTTTGTGAAAGAACTTGGACCCAATGTTGGAAGTTCTGGAGATGGAAATACT
GGTGAACAGACAAGAAAGGCATGGGGCTCATGGGCTCAAGCTCTTTACGACACTGCAATG
CATCCTGAGAGGCATAAGAATATAATAGAGAAGTCAGATGATGTTGTTGTACTGAATGAT
CTTTATCCAAAGGCTCAGAAACACCTCTTAGTTTTGGCACGTATTGAAGGTCTTGACCGT
CTTGCAGATGTTCAGAAGGAGCACCTCACATTATTAAAGACAATGCACAGTGTTGGCTTG
AAGTGGGCTGAAATGTTTCTATCGGAAAACAATTCATTGATATTCCGCCTTGGATATCAT
TCGGTTCCTTCAATGCGTCAACTGCATCTTCATGTGGATTCAGTTGATGTAATAGATGAA
GTTAGCCAAAATGGGAAGGCCACTTTGAAGGATGAGAATTTCCTTTCCATGGAGCTAAGG
TGCCATCGATGTCAAAGTGCACATCCAAACATTCCTCGCCTTAAGGCACACATTAGTTCT
TGTCAAGCTTCCTTTCCTGCATTTCTGCTGCAAAATGGTCGTCTAGTTTTTTTAGCAGGT
AAAGATGCAAATCACTGA

Peptide Sequence

PEP ID

XP_016467253.1
PEP Infomation

PREDICTED: transcription factor bHLH140-like isoform X3 [Nicotiana tabacum]
Sequence

MEAMEIDPETNSKGKDEAKPIMVILMGAPGSGKSTFCDLVMRVSTRPWVRICQDTIGNGK
AGTKNQCLTGAASALKEGKSVFIDRCNLDREQRADFLKLVGPEVEKHAVVLDLPAKVCIS
RSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLNEGYTRITVCQDEKDVQAAINTYTALG
PSDKLPPGFFGQKNSDAKVQLGIMKFLKKKDPPGCSDTVTNVSPENIQSHATKEKDSNQV
LESREEPKMASAGSNISLENTPTLAFPSISTADFHFNLDKASDIIVEKVEEYVNKLGNAR
LVLVDLSQNSKILSLVKAKAAEKNIDTKKFFTFAGNITKLYSEGGLHCTVIANATNWRLK
PGGGGVNAAIFSAAGPALETATKVRAGSLNPGKAIVVPLPSSSPLFSREGVTHVIHVLGP
NMNSQRPNHLNNDYVKGCQILREAYSSLFDGFAFIVRTQGKPVKDNFEKELKREAQAEQG
STNGEKAKREAVCEVDMNKKYKSFVKELGPNVGSSGDGNTGEQTRKAWGSWAQALYDTAM
HPERHKNIIEKSDDVVVLNDLYPKAQKHLLVLARIEGLDRLADVQKEHLTLLKTMHSVGL
KWAEMFLSENNSLIFRLGYHSVPSMRQLHLHVDSVDVIDEVSQNGKATLKDENFLSMELR
CHRCQSAHPNIPRLKAHISSCQASFPAFLLQNGRLVFLAGKDANH

Transcript Sequence

Gene sequence data has not been registered.